PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000529.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 879aa    MW: 100522 Da    PI: 6.3171
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000529.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.24.4e-2687189291
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdg 74 
                              +Y+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k              +e++  +ra  +t+Cka+++vk++ dg
  Itr_sc000529.1_g00021.1  87 YYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKPanrprsrqgskqdQENATGRRACAKTDCKASMHVKRRPDG 172
                              8***************************************9999889999*9999886666666699******************* PP

                     FAR1  75 kwevtkleleHnHelap 91 
                              kw ++++e+eHnHel+p
  Itr_sc000529.1_g00021.1 173 KWIIHRFEKEHNHELMP 189
                              **************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-2487189IPR004330FAR1 DNA binding domain
PfamPF105511.0E-26287378IPR018289MULE transposase domain
PROSITE profilePS509669.433567603IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-5567600IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-7578605IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010218Biological Processresponse to far red light
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MDIDLRLPSG DHDKEEETNG IVNLLDHEEK LDGVEVGGDM DIEEKIHVED GGEMNSPMGD  60
MGEFKEDVNL EPLAGMEFES HGEAYAYYQE YARSMGFNTA IQNSRRSKTS REFIDAKFAC  120
SRYGTKREYE KPANRPRSRQ GSKQDQENAT GRRACAKTDC KASMHVKRRP DGKWIIHRFE  180
KEHNHELMPA QAVSEQTRRM YAAMARQFAE YKNVVGLKHD SRSPSDKVRN LAMEAGEANI  240
LLEFFIQMQS MNSNFFYAID VSEDHRLKNL FWTDAKSRHD YANFSDVVSF DTTYLRNKYK  300
MPLALFIGVN QHYQFMLLGC ALLSDESSAT FSWVMRTWLK AMGDQAPKII ITDQEMVMKS  360
VVSEILPSTL HFFCQWQVLG KVSENLNHII KQNEEFMAEF ENCIYRSWTD EEFEKSWQNL  420
VQKFELGENE LMLSLYEDRT KWVPTFMKNA FLAGMSTALR SESVNSFFDK YVHRKTTIQE  480
FVKQYEAILQ DRYEEEAKAD SDTWNKQPAL KSPSPFEKHV AGVYTHAVFK KFQVEVVAAV  540
ACIPKDEKRD ETAVTFIIQD FEKSQEFTVT WNGHKSEVSC MCHMFEYKGF LCRHAMVVLQ  600
IGGISTIPPQ YILKRWTKDA KVRFPVIDGS EGVQSRVQRY NSLSQQAMRL AEEGSLSQES  660
YRFAVRSLDE TFGNCVDANS SNKNLVDAGT TSTPGLLCTE EDNQNRSMSK MNKKKNNPTK  720
KRKANSEPDV MAVGAPESLQ QMDKLSSRPV TLDGYFGPQH GLQGMVQLNL MAPTRDNYYA  780
NQQPMQGLGQ LNSIAPTHDG YYGTQPAMHG LGQMDFFRTP SYPYGIRVNI TAFSQILENQ  840
LIKCLSESSF VSSCAGAHGS VEVKIFYNAI WFVRRALDL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00078ChIP-seqTransfer from AT3G22170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804948.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X3
RefseqXP_009804949.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X3
RefseqXP_016481998.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X3
RefseqXP_016481999.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X3
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLK4CEI70.0K4CEI7_SOLLC; Uncharacterized protein
STRINGSolyc07g043270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3